TAMALg: is the package available?

I’ve received a lot of questions recently about TAMALg availability. Unfortunately, there is only a difficult-to-install package available right now; I sent it to someone recently and they had a terrible time getting it going.
I do describe the algorithm in the supplementary materials to the ENCODE spike-in competition paper (Johnson et al, Genome Research 2008).
I [...]

TAMALg and TAMALPAIS: NimbleGen data analysis

Ok, I wanted to write about the relationship between TAMALPAIS and TAMALg.
keywords: Mark Bieda, TAMALPAIS, TAMALg, NimbleGen, ChIP-chip
Background
A major part of my research is developing algorithms and statistical models for analysis of ChIP-chip experiments – specifically those done with NimbleGen arrays.
TAMALPAIS (available here) predicts binding sites from NimbleGen array data and also does some basic [...]