TAMALPAIS and promoter arrays

Posted on June 10, 2008 by markbieda

TAMALPAIS NimbleGen Promoter Arrays Array Analysis Problems Mark Bieda
I’ve been receiving some questions on TAMALPAIS usage for promoter arrays via email.
On the TAMALPAIS website, I say “Do not use this for promoter arrays.“
This is actually not quite true; there are a limited number of cases in which TAMALPAIS will perform well for promoter arrays. In [...]

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On the promoter array analysis server

Posted on May 31, 2008 by markbieda

NimbleGen Promoter Arrays Mark Bieda server Analysis
Note: minor corrections on June 9, 2008
The promoter array server is located at this site
IMPORTANT USAGE NOTE: USE FIREFOX (Internet explorer appears to create issues)
What does it do?
1. This does a simple list comparison using NimbleGen .tab files
In other words, it just outputs the number of entries that are [...]

Filed under: Bioinformatics, Promoter Arrays | Tagged: , , | Leave a Comment »